Our Publications

Scientific papers written by Cytocast scientists introducing the fundamental science behind our product.

  1. A. Ecker, G. Szabó, J. Szalma, E. Fichó, I. Reguly, A. Csikász-Nagy: 'Digital Twin Approaches for Interpretable Side Effect Prediction in Drug Discovery', Drug Discovery Today, vol. 31, ii:3, (2026)
  2. R. Fekete, A. Simats, E. Bíró, B. Pósfai, Cs. Cserép, A. D. Schwarcz, E. Szabadits, Zs. Környei, K. Tóth, E. Fichó, J. Szalma, et al. 'Microglia dysfunction, neurovascular inflammation and focal neuropathologies are linked to IL-1- and IL-6-related systemic inflammation in COVID-19', Nature Neuroscience, 28 : 3 pp. 558-576. , 19 p., (2025)
  3. A. Csikász-Nagy, E. Fichó, S. Noto, and I. Reguly, ‘Computational tools to predict context-specific protein complexes’, Current Opinion in Structural Biology, vol. 88. Elsevier BV, p. 102883, Oct. (2024)
  4. M. Miski, Á. Weber, K. Fekete-Molnár, B. M. Keömley-Horváth, A. Csikász-Nagy, and Z. Gáspári, ‘Simulated complexes formed from a set of postsynaptic proteins suggest a localised effect of a hypomorphic Shank mutation’, BMC Neuroscience, vol. 25, no. 1. Springer Science and Business Media LLC, Jul. 06, 2024
  5. F. Reali, A. Csikász-Nagy and G Selvaggio: Editorial: ’Use of quantitative systems pharmacology pipelines to bridge in vitro and in vivo results in drug discovery’, Front. Syst. Biol. 3:1291610, (2023)
  6. Miski, Marcell, Bence Márk Keömley-Horváth, Dorina Rákóczi Megyeriné, Attila Csikász-Nagy, and Zoltán Gáspári. "Diversity of synaptic protein complexes as a function of the abundance of their constituent proteins: A modeling approach." PLOS Computational Biology 18, no. 1 (2022)
  7. Quaglia, Federica, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos et al. "DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation." Nucleic Acids Research 50, no. D1 (2022): D480-D487.
  8. Pancsa, Rita, Erzsébet Fichó, Dániel Molnár, Éva Viola Surányi, Tamás Trombitás, Dóra Füzesi, Hanna Lóczi et al. "dNTPpoolDB: a manually curated database of experimentally determined dNTP pools and pool changes in biological samples." Nucleic Acids Research 50, no. D1 (2022)
  9. Reguly, István Z., Dávid Csercsik, János Juhász, Kálmán Tornai, Zsófia Bujtár, Gergely Horváth, Bence Keömley-Horváth et al. "Microsimulation based quantitative analysis of COVID-19 management strategies." PLoS computational biology 18, no. 1 (2022)
  10. Rizzetto, Simone, and Attila Csikász-Nagy. "Toward large-scale computational prediction of protein complexes." Computational Cell Biology: Methods and Protocols (2018): 271-295.
  11. Rizzetto, Simone, Petros Moyseos, Bianca Baldacci, Corrado Priami, and Attila Csikász-Nagy. "Context-dependent prediction of protein complexes by SiComPre." NPJ Systems Biology and Applications 4, no. 1 (2018): 37.
  12. Rizzetto, Simone, Corrado Priami, and Attila Csikász-Nagy. "Qualitative and quantitative protein complex prediction through proteome-wide simulations." PLOS Computational Biology 11, no. 10 (2015): e1004424.